About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18627209_18627789_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18627209 - 18627789
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TCTGATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTGTCCAACACG
Flanking Amino Acid:
PIRKHKPTVPSLSPYTCLPP
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.5
41.4
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
82.5
0.73
0.9
76.5
37.2
Minor 5ss
39.2
-1.2
3
50.7
46
Minor BPS
45.8
-0.4
2.4
59.88
47.6

Associated Gene:

Gene:
UBAP1L
Ensembl Gene ID:
ENSAPLG00000023567
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027577
18622072 - 18632071
10000