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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18631050_18631936_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18631050 - 18631936
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAGCG
5'SS Class:
major
3'SS Sequence:
CTCCCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TGACGATAAAAT
Flanking Amino Acid:
MEMFQYSEKKAAEFLHLLAQ
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
63.4
41.5
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
81
0.7
0.7
72.4
32.3
Minor 5ss
26.2
-2.7
3
31.1
42.5
Minor BPS
40.4
-0.6
2.2
57.96
43.9

Associated Gene:

Gene:
UBAP1L
Ensembl Gene ID:
ENSAPLG00000023567
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027577
18622072 - 18632071
10000