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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18644024_18644216_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18644024 - 18644216
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGGC
5'SS Class:
major
3'SS Sequence:
CTCTCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
GGGTCCCCACGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
60.3
39.3
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
77.9
0.63
0.7
72.8
25.4
Minor 5ss
23.9
-3
3.3
32.2
42.7
Minor BPS
39.3
-0.7
2.2
54.52
46.5

Associated Gene:

Gene:
RASL12
Ensembl Gene ID:
ENSAPLG00000015628
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016289
18643271 - 18647671
4401