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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18654004_18732709_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
18654004 - 18732709
Intron Length:
78706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GAAAGCAGAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCACCCAAGACG
Flanking Amino Acid:
LLVYSQKQHRSSSGRQEEMT
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
46.8
-0.1
1.1
33.8
40
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
44.5
-0.5
2
49.9
43.9

Associated Gene:

Gene:
PARP16
Ensembl Gene ID:
ENSAPLG00000015958
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046458
18652823 - 18737842
85020