About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18662763_18664144_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18662763 - 18664144
Intron Length:
1382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCC
5'SS Class:
major
3'SS Sequence:
AATCTTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TTGTCTGGAAAT
Flanking Amino Acid:
SKDSSGEGSKKSVGEGGGKK
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
68.6
37.3
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
79.8
0.67
0.8
77.9
35.5
Minor 5ss
45.2
-0.5
2.8
60.5
44
Minor BPS
48.7
-0
2.2
73.83
43

Associated Gene:

Gene:
CLPX
Ensembl Gene ID:
ENSAPLG00000014863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015511
18591048 - 18681292
90245