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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18664263_18671386_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18664263 - 18671386
Intron Length:
7124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
GCTTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTCTTACCA
Flanking Amino Acid:
DLCTHVETFVSSTRFVKCEK
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
81.2
33.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.7
0.8
0.8
80.7
31.4
Minor 5ss
49
-0.1
2.8
77.2
37.5
Minor BPS
69.3
0.6
1.6
80.35
35.4

Associated Gene:

Gene:
CLPX
Ensembl Gene ID:
ENSAPLG00000014863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015511
18591048 - 18681292
90245