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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18671542_18672592_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18671542 - 18672592
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTTC
5'SS Class:
major
3'SS Sequence:
AGTCGTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTTTAGAAAT
Flanking Amino Acid:
QQKPPPPPKKIYNYLDKYVV
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
67.4
38.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
74.8
0.56
0.9
70
40.8
Minor 5ss
39.6
-1.2
3.6
58.4
46.5
Minor BPS
48.4
-0
1.8
70.59
40.2

Associated Gene:

Gene:
CLPX
Ensembl Gene ID:
ENSAPLG00000014863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015511
18591048 - 18681292
90245