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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18672753_18674228_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18672753 - 18674228
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTCTG
5'SS Class:
major
3'SS Sequence:
TCCTCTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTATTACTG
Flanking Amino Acid:
VEKQTSLTPRELEIRRREDE
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
66.5
44.5
Major BPS
100
1.24
0.5
100
0
Major PPT
77.6
0.62
0.7
76.6
25.4
Minor 5ss
40.3
-1.1
2.7
50.3
46
Minor BPS
55.2
0.03
1.9
67.73
40.4

Associated Gene:

Gene:
CLPX
Ensembl Gene ID:
ENSAPLG00000014863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015511
18591048 - 18681292
90245