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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18674271_18675392_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18674271 - 18675392
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
ACTACTATTATT
Flanking Amino Acid:
RRREDEYRFTKLLQIAGISP
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
90.2
0.9
0.7
88.7
28.3
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
46.3
-0.2
1.9
63.51
40.8

Associated Gene:

Gene:
CLPX
Ensembl Gene ID:
ENSAPLG00000014863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015511
18591048 - 18681292
90245