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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18675570_18676398_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18675570 - 18676398
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACAGC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTGTTTTACCA
Flanking Amino Acid:
NILLLGPTGSGKTLLAQTLA
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
62.1
42.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
45.2
-0.5
2.7
60.7
44
Minor BPS
61
0.34
1.7
73.92
38.7

Associated Gene:

Gene:
CLPX
Ensembl Gene ID:
ENSAPLG00000014863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015511
18591048 - 18681292
90245