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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18676989_18677500_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18676989 - 18677500
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTAAAAAA
Flanking Amino Acid:
RDVGGEGVQQGLLKLLEGTI
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.6
0.55
0.7
73.2
25
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
48.7
-0.1
2
68.75
37.7

Associated Gene:

Gene:
CLPX
Ensembl Gene ID:
ENSAPLG00000014863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015511
18591048 - 18681292
90245