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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18677666_18678431_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18677666 - 18678431
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CTTCATGTAAGC
Flanking Amino Acid:
RIISRRKNEKYLGFGTPSNI
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.4
26.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
32.5
-2
3.3
40.3
40.1
Minor BPS
42.5
-0.5
2.3
56.02
42.7

Associated Gene:

Gene:
CLPX
Ensembl Gene ID:
ENSAPLG00000014863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015511
18591048 - 18681292
90245