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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18678732_18679197_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18678732 - 18679197
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCACT
5'SS Class:
major
3'SS Sequence:
TTTCTGGATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
ATTAACTAAACT
Flanking Amino Acid:
QYQALFSMDKCELNVTEDAL
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
69.2
41.2
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
70.7
0.47
1
65.5
40.3
Minor 5ss
44.5
-0.6
2.5
59.3
44.9
Minor BPS
59.6
0.38
1.9
80.49
40.8

Associated Gene:

Gene:
CLPX
Ensembl Gene ID:
ENSAPLG00000014863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015511
18591048 - 18681292
90245