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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18685449_18686071_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18685449 - 18686071
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATCCT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGTGTTTTAACA
Flanking Amino Acid:
EIDSKLFGDPDEFPLADLLQ
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
68.7
42.2
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
77.6
0.62
1
73.3
40.9
Minor 5ss
34.8
-1.7
3.3
50.7
45.7
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022299
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048539
18683078 - 18686710
3633