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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18686160_18686550_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18686160 - 18686550
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAATG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TCTCTCTTAAAG
Flanking Amino Acid:
EHSVAALIQIRHEWDQYLVP
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.8
42.1
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
77.4
0.62
1
78.4
27.8
Minor 5ss
35
-1.7
3.4
48
47.7
Minor BPS
64.1
0.3
1.5
65.72
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022299
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048539
18683078 - 18686710
3633