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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18694264_18694670_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18694264 - 18694670
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
TACTCCATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTAACTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
67.8
37.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
77.9
0.63
0.9
74.3
34.7
Minor 5ss
33.9
-1.8
3.2
41.8
40.2
Minor BPS
61.2
0.35
1.5
66.23
39.9

Associated Gene:

Gene:
MTFMT
Ensembl Gene ID:
ENSAPLG00000015719
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016395
18694190 - 18698809
4620