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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18694794_18695834_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18694794 - 18695834
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
TTTTCCTGCAGT
Flanking Amino Acid:
MEIRPKRFDVGPIIKQ
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.7
34.9
Major BPS
61.4
0.28
1
53
33.7
Major PPT
79
0.65
0.8
73.7
31.4
Minor 5ss
45.6
-0.5
2.5
57.3
47.4
Minor BPS
57.8
0.32
2.2
84.75
41.8

Associated Gene:

Gene:
MTFMT
Ensembl Gene ID:
ENSAPLG00000015719
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016395
18694190 - 18698809
4620