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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18695938_18696483_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18695938 - 18696483
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTCA
5'SS Class:
major
3'SS Sequence:
AAATATTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATTTGCTAAAAT
Flanking Amino Acid:
EILAKMGANMLLSVLKHLPE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.4
35.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73.6
0.53
1
66.4
43.8
Minor 5ss
36.5
-1.5
3.3
44.6
45.3
Minor BPS
55
0.23
2.2
79.57
42.3

Associated Gene:

Gene:
MTFMT
Ensembl Gene ID:
ENSAPLG00000015719
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016395
18694190 - 18698809
4620