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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18697192_18697290_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18697192 - 18697290
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATGGCTGAAACT
Flanking Amino Acid:
IRLHRAIGSMFPLQTLWKGS
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
71.6
38.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.5
0.78
0.8
76.2
37.8
Minor 5ss
34.2
-1.8
3.5
44.2
44.6
Minor BPS
44.9
-0.3
2.3
65.18
46

Associated Gene:

Gene:
MTFMT
Ensembl Gene ID:
ENSAPLG00000015719
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016395
18694190 - 18698809
4620