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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18697373_18698033_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18697373 - 18698033
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GTTTATATAAAA
Flanking Amino Acid:
VEVDNIPGFADQVLNDDEAV
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
80.7
0.69
0.9
76.9
37.3
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
50.1
0
1.9
67.76
37.8

Associated Gene:

Gene:
MTFMT
Ensembl Gene ID:
ENSAPLG00000015719
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016395
18694190 - 18698809
4620