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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18710577_18711375_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18710577 - 18711375
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTGT
5'SS Class:
major
3'SS Sequence:
CCTCTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCACAG
U12 Branch Point Sequence:
GCAGCCACGAGG
Flanking Amino Acid:
FSPLVMLSLESTRSSSRRGA
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
68.6
39.1
Major BPS
44.5
-0.3
1.6
54.7
43.1
Major PPT
71.4
0.48
0.8
64.9
30.7
Minor 5ss
37.7
-1.4
3
45.7
43.5
Minor BPS
36
-1.2
1.9
33.06
40.4

Associated Gene:

Gene:
CILP
Ensembl Gene ID:
ENSAPLG00000026330
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030221
18704069 - 18713322
9254