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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18725799_18726104_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18725799 - 18726104
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GATTCCATGATT
Flanking Amino Acid:
EISKQLKVNKGLVRNQNDPI
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.6
0.44
0.9
62
38.7
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
63.4
0.5
1.6
78.09
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024770
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018531
18724412 - 18726594
2183