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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18732023_18732709_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18732023 - 18732709
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTCACAAAACT
Flanking Amino Acid:
LLVYSQKQHRSPSGQSSWFS
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
90.4
0.91
0.6
88.5
20.9
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
50.4
0.09
2.1
79.86
41.4

Associated Gene:

Gene:
PARP16
Ensembl Gene ID:
ENSAPLG00000015958
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016654
18731878 - 18737842
5965