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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18732852_18733592_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18732852 - 18733592
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TATTCCCCAAAA
Flanking Amino Acid:
PDVKCQVKKKDSEEIDRKRA
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.2
0.66
0.8
73.3
30.6
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
53.8
0.12
2
71.73
39.4

Associated Gene:

Gene:
PARP16
Ensembl Gene ID:
ENSAPLG00000015958
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046458
18652823 - 18737842
85020
ENSAPLT00000016654
18731878 - 18737842
5965