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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18758941_18759384_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18758941 - 18759384
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CGTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGTTAT
U12 Branch Point Sequence:
GCCTCGTTATTT
Flanking Amino Acid:
VLFLMFGYRGRLLMCKNVQE
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
68.8
0.47
1.3
59.6
46.8
Major PPT
81.7
0.71
0.9
72.8
41.9
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
47.2
-0.1
2.3
63.81
47

Associated Gene:

Gene:
IGDCC3
Ensembl Gene ID:
ENSAPLG00000016111
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016805
18758399 - 18833083
74685