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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18760517_18760745_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18760517 - 18760745
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATGTCTCAAAA
Flanking Amino Acid:
NITAYNITHLDASVVYEVKL
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
64.9
0.34
1
60
39.5
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
53.1
0.09
1.7
65.86
40.2

Associated Gene:

Gene:
IGDCC3
Ensembl Gene ID:
ENSAPLG00000016111
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016805
18758399 - 18833083
74685