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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18760935_18765919_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18760935 - 18765919
Intron Length:
4985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GATTTCTAACCC
Flanking Amino Acid:
EVTVVSTLGEVPAMPSLFIK
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
82.1
0.72
0.8
79.8
32.2
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
50.1
-0
1.9
63.62
41.9

Associated Gene:

Gene:
IGDCC3
Ensembl Gene ID:
ENSAPLG00000016111
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016805
18758399 - 18833083
74685