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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18766691_18774073_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18766691 - 18774073
Intron Length:
7383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
GTGTCCCCACGC
Flanking Amino Acid:
SDHIKLKNNNSTLSIYGINQ
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
68.6
0.42
0.9
62.5
33.5
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
40.5
-0.7
2.2
51.98
44.9

Associated Gene:

Gene:
IGDCC3
Ensembl Gene ID:
ENSAPLG00000016111
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016805
18758399 - 18833083
74685