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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18774240_18778637_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18774240 - 18778637
Intron Length:
4398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATCC
Flanking Amino Acid:
RTAQGRLVVQAPAEFVQHPQ
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.5
0.82
0.7
81.4
23.6
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
63.2
0.39
1.8
78.26
37.5

Associated Gene:

Gene:
IGDCC3
Ensembl Gene ID:
ENSAPLG00000016111
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016805
18758399 - 18833083
74685