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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18784652_18788495_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18784652 - 18788495
Intron Length:
3844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGCCTTCTAACA
Flanking Amino Acid:
FSREARLTVSGSHSTVYKDP
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
78.8
35.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.7
0.67
0.8
73
31.8
Minor 5ss
32.4
-2
2.5
38.4
39.2
Minor BPS
50.3
0.01
1.7
61.67
38.4

Associated Gene:

Gene:
IGDCC3
Ensembl Gene ID:
ENSAPLG00000016111
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016805
18758399 - 18833083
74685