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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1878776_1883164_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1878776 - 1883164
Intron Length:
4389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GAATTCTTATTT
Flanking Amino Acid:
KKHNKQGNKEDYDLSKLRDF
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
77.2
37.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90
0.9
0.7
88.2
28.6
Minor 5ss
41.3
-1
2.9
58.1
46.1
Minor BPS
59
0.36
1.6
70.5
40.4

Associated Gene:

Gene:
SCG3
Ensembl Gene ID:
ENSAPLG00000003099
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003174
1856688 - 1884882
28195