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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18791137_18827936_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18791137 - 18827936
Intron Length:
36800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CACACCTGACCC
Flanking Amino Acid:
VSRKARIQAATMSDFHVHPQ
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.4
41.2
Major BPS
77.7
0.69
1
81
30.2
Major PPT
82.1
0.72
0.9
73.5
41.8
Minor 5ss
38.2
-1.3
2.7
49.6
40.1
Minor BPS
46.9
-0.2
1.8
53.03
44.1

Associated Gene:

Gene:
IGDCC3
Ensembl Gene ID:
ENSAPLG00000016111
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016805
18758399 - 18833083
74685