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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18846094_18851425_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18846094 - 18851425
Intron Length:
5332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TCTCTCCCACTT
Flanking Amino Acid:
PEDIVHGKRKSSWNKSANQP
Intron Amino Acid Position:
863

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
93.3
0.97
0.6
89.3
19.4
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
42.7
-0.4
2
61.67
42.7

Associated Gene:

Gene:
IGDCC4
Ensembl Gene ID:
ENSAPLG00000013127
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013708
18843692 - 18868007
24316