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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18852427_18852925_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18852427 - 18852925
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGAATT
5'SS Class:
major
3'SS Sequence:
CTTCCCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AACAGCTGAAAT
Flanking Amino Acid:
DVHTLREKLSDVLDIHSVTG
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
77.4
37.2
Major BPS
61.3
0.28
1
62
30.6
Major PPT
73.7
0.53
0.7
65.8
30.2
Minor 5ss
38.5
-1.3
3.4
54.7
43.7
Minor BPS
45
-0.3
1.9
58.91
43.4

Associated Gene:

Gene:
IGDCC4
Ensembl Gene ID:
ENSAPLG00000013127
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013708
18843692 - 18868007
24316