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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18853064_18853637_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18853064 - 18853637
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTGATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ACATTTTTAACC
Flanking Amino Acid:
DDMWTLLTREGNIFSTEVHG
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73
0.52
1
73.6
40.6
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
69.2
0.58
1.2
68.76
36.9

Associated Gene:

Gene:
IGDCC4
Ensembl Gene ID:
ENSAPLG00000013127
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013708
18843692 - 18868007
24316