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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18854316_18854996_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18854316 - 18854996
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGG
5'SS Class:
major
3'SS Sequence:
CCTCTTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGTTAATGACCT
Flanking Amino Acid:
KNASLVTYYTSSDEDILISG
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.7
44.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
78.1
0.63
0.9
75.6
32.8
Minor 5ss
31
-2.2
3.2
39.7
45.9
Minor BPS
46.8
-0.1
2.1
72.41
43.5

Associated Gene:

Gene:
IGDCC4
Ensembl Gene ID:
ENSAPLG00000013127
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013708
18843692 - 18868007
24316