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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18855181_18855889_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18855181 - 18855889
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCACCACCGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
ACATCTTTCACT
Flanking Amino Acid:
KTEKAPAAAVDPPVQKGPPL
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
77.7
0.69
1
81
30.2
Major PPT
58.6
0.19
0.9
51.7
32.4
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
61.7
0.45
1.7
74.74
42.3

Associated Gene:

Gene:
IGDCC4
Ensembl Gene ID:
ENSAPLG00000013127
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013708
18843692 - 18868007
24316