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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18855998_18859790_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18855998 - 18859790
Intron Length:
3793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGATTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTGAT
U12 Branch Point Sequence:
CCCTGCTTGATT
Flanking Amino Acid:
KVKQYELTRLAPGRLYEVKL
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
66.1
0.4
1.3
59.3
47.1
Major PPT
84.7
0.78
0.9
77
41.9
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
53.2
0.18
1.8
65.94
45.7

Associated Gene:

Gene:
IGDCC4
Ensembl Gene ID:
ENSAPLG00000013127
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013708
18843692 - 18868007
24316