About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18860025_18860421_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18860025 - 18860421
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGCT
5'SS Class:
major
3'SS Sequence:
TGTCCTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAA
U12 Branch Point Sequence:
AGTGACTAAACA
Flanking Amino Acid:
RTPDRDNQTHVPFAPTELKV
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
65.2
39
Major BPS
59.8
0.24
1.2
61.9
33.9
Major PPT
78
0.63
0.8
70
36.5
Minor 5ss
31.8
-2.1
3.7
44.6
44.4
Minor BPS
49.7
-0
2
63.53
42.5

Associated Gene:

Gene:
IGDCC4
Ensembl Gene ID:
ENSAPLG00000013127
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013708
18843692 - 18868007
24316