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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18860593_18861995_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18860593 - 18861995
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCCTTTTTCATT
Flanking Amino Acid:
YKIDYCTLKEDQVTSIEVGG
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
100
1.24
0.5
100
0
Major PPT
71.7
0.49
1
67.4
39.1
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
49
0
1.7
61.64
44

Associated Gene:

Gene:
IGDCC4
Ensembl Gene ID:
ENSAPLG00000013127
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013708
18843692 - 18868007
24316