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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18862134_18863020_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18862134 - 18863020
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGTTGA
5'SS Class:
major
3'SS Sequence:
GTTTTCTGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CTTTACTGACTT
Flanking Amino Acid:
SSIIVQTLEDVPSAAPQLSL
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
62.5
40.5
Major BPS
74
0.6
1
65.6
41.1
Major PPT
76.3
0.59
0.9
69.3
41.7
Minor 5ss
33.5
-1.9
3
40.1
46
Minor BPS
50.5
0.09
1.9
73.59
43.5

Associated Gene:

Gene:
IGDCC4
Ensembl Gene ID:
ENSAPLG00000013127
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013708
18843692 - 18868007
24316