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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18864484_18865026_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18864484 - 18865026
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
CCTGCATTAATT
Flanking Amino Acid:
VTAAAELRVLATPSISQAPE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
80.9
0.7
0.7
72.9
31.9
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
58.8
0.36
1.8
72.41
45

Associated Gene:

Gene:
IGDCC4
Ensembl Gene ID:
ENSAPLG00000013127
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013708
18843692 - 18868007
24316