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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1889826_1894468_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1889826 - 1894468
Intron Length:
4643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGTCCCTGATCT
Flanking Amino Acid:
AARKLKDDSVREEENEEGPY
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
76
34.8
Major BPS
84.6
0.86
1
74
41.2
Major PPT
81.6
0.71
0.8
73.8
36.8
Minor 5ss
33.3
-1.9
3.2
44.6
43.4
Minor BPS
60.3
0.4
1.8
79.81
41.4

Associated Gene:

Gene:
LYSMD2
Ensembl Gene ID:
ENSAPLG00000003096
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003132
1889774 - 1894806
5033