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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18948912_18949622_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18948912 - 18949622
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTGCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
CTATTTAGAAAT
Flanking Amino Acid:
VAMQAEKFPSEPNRLLLLHG
Intron Amino Acid Position:
821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72.5
39.9
Major BPS
70
0.5
1
67
39.8
Major PPT
84.9
0.79
0.8
84.1
30.8
Minor 5ss
45.1
-0.5
2.8
54.8
43.4
Minor BPS
45.9
-0.2
1.7
63.48
40.5

Associated Gene:

Gene:
DPP8
Ensembl Gene ID:
ENSAPLG00000013345
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013950
18948106 - 18968076
19971