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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18951779_18952512_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18951779 - 18952512
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GAACTAACAACT
Flanking Amino Acid:
KFEGAFKYKMGQIEIDDQVE
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
80.4
0.68
0.7
72.4
32.2
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
41
-0.6
1.9
55.43
39.1

Associated Gene:

Gene:
DPP8
Ensembl Gene ID:
ENSAPLG00000013345
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013950
18948106 - 18968076
19971