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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18954019_18954344_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18954019 - 18954344
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATTC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TTCACAATAATG
Flanking Amino Acid:
GYSHACCVSQDCDMFISKYS
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.2
67.1
39.7
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
88.3
0.86
0.6
82.1
30
Minor 5ss
47
-0.3
3.1
68.2
42.8
Minor BPS
48.1
-0.2
2
58.4
43.1

Associated Gene:

Gene:
DPP8
Ensembl Gene ID:
ENSAPLG00000013345
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013950
18948106 - 18968076
19971