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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18958486_18959601_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18958486 - 18959601
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGCGTATG
5'SS Class:
major
3'SS Sequence:
GTCTCCTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTTCTCTAATA
Flanking Amino Acid:
ARAGWTPEGKYVWSILLDRS
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.36
1
64.4
41.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
71.2
0.48
0.9
66
34.6
Minor 5ss
34.7
-1.7
3.1
43.3
39.2
Minor BPS
72.4
0.7
1.6
83.86
29.9

Associated Gene:

Gene:
DPP8
Ensembl Gene ID:
ENSAPLG00000013345
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013950
18948106 - 18968076
19971