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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18960775_18962698_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18960775 - 18962698
Intron Length:
1924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TCTGTTTTTATA
Flanking Amino Acid:
RTDSFRYPKTGTANPKVTFK
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
84.3
0.77
0.7
79.8
32.3
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
49.7
-0
1.7
61.32
39.6

Associated Gene:

Gene:
DPP8
Ensembl Gene ID:
ENSAPLG00000013345
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013950
18948106 - 18968076
19971