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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18964706_18965587_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18964706 - 18965587
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
CTCTTTCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTGCTTACTA
Flanking Amino Acid:
VKDGGPHGFTQQPLRPILVE
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
73.5
33.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.1
0.52
0.9
69.8
34.4
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
53.2
0.1
2
66.64
40.2

Associated Gene:

Gene:
DPP8
Ensembl Gene ID:
ENSAPLG00000013345
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013950
18948106 - 18968076
19971