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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18966824_18967769_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18966824 - 18967769
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
ACTTCGACAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTTCTCACTT
Flanking Amino Acid:
GPHSDRIYYLAMSGENRENT
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
67.1
44.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
58.5
0.19
1
52.5
36.1
Minor 5ss
42
-0.9
3.1
51.7
45
Minor BPS
55.1
0.24
1.8
75.15
42.4

Associated Gene:

Gene:
DPP8
Ensembl Gene ID:
ENSAPLG00000013345
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013950
18948106 - 18968076
19971